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Structures of Three HIV-1 HLA-B5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Non-Progression
Crystallization Crystal Properties Matthews coefficient Solvent content 1.87 33.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.912 α = 90 b = 81.887 β = 90 c = 108.154 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 30 98.1 0.06 9.5 98052 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.35 65.23 91216 4806 98 0.198 0.197 0.215 RANDOM 22.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.31 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.666 r_dihedral_angle_4_deg 15.658 r_dihedral_angle_3_deg 12.692 r_dihedral_angle_1_deg 5.739 r_scangle_it 2.823 r_scbond_it 1.831 r_angle_refined_deg 1.321 r_mcangle_it 1.27 r_mcbond_it 0.737 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.666 r_dihedral_angle_4_deg 15.658 r_dihedral_angle_3_deg 12.692 r_dihedral_angle_1_deg 5.739 r_scangle_it 2.823 r_scbond_it 1.831 r_angle_refined_deg 1.321 r_mcangle_it 1.27 r_mcbond_it 0.737 r_nbtor_refined 0.317 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.146 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3128 Nucleic Acid Atoms Solvent Atoms 769 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement