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Acyl-enzyme intermediate between Alr0975 and glutathione at pH 3.4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BTW PDB ENTRY 2BTW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.2 pH 3.20
Crystal Properties Matthews coefficient Solvent content 2.21 43.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.253 α = 90 b = 58.259 β = 108.87 c = 72.561 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 29 99.6 0.08 6 3.6 87418
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 99.6 0.3 2.1 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BTW 1.4 29.59 85298 1744 99.6 0.174 0.174 0.173 0.188 0.1868 RANDOM 10.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.02 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.416 r_dihedral_angle_4_deg 16.115 r_dihedral_angle_3_deg 12.005 r_dihedral_angle_1_deg 5.694 r_scangle_it 2.728 r_scbond_it 1.774 r_angle_refined_deg 1.159 r_mcangle_it 1.087 r_mcbond_it 0.71 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.416 r_dihedral_angle_4_deg 16.115 r_dihedral_angle_3_deg 12.005 r_dihedral_angle_1_deg 5.694 r_scangle_it 2.728 r_scbond_it 1.774 r_angle_refined_deg 1.159 r_mcangle_it 1.087 r_mcbond_it 0.71 r_nbtor_refined 0.306 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.208 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.119 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3205 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing