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14-3-3 Protein Theta (Human) Complexed to Peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJA PDB ENTRY 1QJA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M TRISHCL PH8.5,30% PEG4000, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.307 α = 90 b = 85.964 β = 112.67 c = 64.666 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU-MSC R-AXIS HTC OSMIC MIRRORS 2005-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 34.88 96.4 0.09 17.7 6.3 14743
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 93.3 0.41 3.5 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QJA 2.8 59.66 13606 1121 95.9 0.21 0.206 0.2311 0.259 0.2765 RANDOM 51.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.01 -0.45 3.62 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.099 r_dihedral_angle_3_deg 16.878 r_dihedral_angle_4_deg 14.445 r_dihedral_angle_1_deg 6.332 r_scangle_it 2.106 r_angle_refined_deg 1.404 r_scbond_it 1.31 r_angle_other_deg 0.839 r_mcangle_it 0.836 r_mcbond_it 0.541
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.099 r_dihedral_angle_3_deg 16.878 r_dihedral_angle_4_deg 14.445 r_dihedral_angle_1_deg 6.332 r_scangle_it 2.106 r_angle_refined_deg 1.404 r_scbond_it 1.31 r_angle_other_deg 0.839 r_mcangle_it 0.836 r_mcbond_it 0.541 r_symmetry_vdw_other 0.288 r_nbd_refined 0.252 r_symmetry_vdw_refined 0.238 r_symmetry_hbond_refined 0.202 r_nbtor_refined 0.195 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.144 r_nbtor_other 0.093 r_chiral_restr 0.078 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3727 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing