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BACILLUS SUBTILIS PECTATE LYASE R279K MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other wild type T4 lysozyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 30 % PEG 4000 0.2 M AMMONIUM SULPHATE 0.1 M SODIUM ACETATE AT PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.19 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.43 α = 90 b = 69.71 β = 112.65 c = 60.23 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 IMAGE PLATE MARRESEARCH 1996-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 56 96 0.085 12 2.6 35454 1.8 12.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.85 99 0.152 4 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT WILD TYPE STRUCTURE 1.8 10 31507 3471 96 0.196 0.1843 0.225 0.2102 RANDOM 11.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.5 p_staggered_tor 15.6 p_planar_tor 3.4 p_scangle_it 1.55 p_mcangle_it 1.204 p_scbond_it 0.977 p_mcbond_it 0.722 p_multtor_nbd 0.226 p_singtor_nbd 0.173 p_xyhbond_nbd 0.103
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.5 p_staggered_tor 15.6 p_planar_tor 3.4 p_scangle_it 1.55 p_mcangle_it 1.204 p_scbond_it 0.977 p_mcbond_it 0.722 p_multtor_nbd 0.226 p_singtor_nbd 0.173 p_xyhbond_nbd 0.103 p_chiral_restr 0.08 p_angle_d 0.02 p_planar_d 0.018 p_plane_restr 0.017 p_bond_d 0.005 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3063 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 1
Software Software Software Name Purpose X-PLOR model building REFMAC refinement DENZO data reduction CCP4 data scaling ROTAVATA data scaling X-PLOR phasing