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LECTIN FROM RALSTONIA SOLANACEARUM COMPLEXED WITH 2-FUCOSYLLACTOSE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other COMPLEX WITH SELENIO SUGAR (WATER, LIGAND REMOVED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP HANGING DROPS WITH 2.5 UL RSL AT 15MG/ML, 2 UL OF RESERVOIR SOLUTION (30% PEG 6000, 0.1M TRIS/HCL PH 8.2) AND 1 UL OF GLYCINE.
Crystal Properties Matthews coefficient Solvent content 3 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.824 α = 90 b = 76.824 β = 90 c = 101.519 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2005-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 55.6 97.1 0.11 14.1 5.2 6756 23.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 96.5 0.46 2.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT COMPLEX WITH SELENIO SUGAR (WATER, LIGAND REMOVED 2.1 55.64 6435 319 97 0.186 0.183 0.253 0.2191 RANDOM 19.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2 -1 -2 3.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.601 r_dihedral_angle_3_deg 12.801 r_dihedral_angle_1_deg 7.218 r_dihedral_angle_4_deg 3.503 r_scangle_it 2.722 r_angle_refined_deg 1.876 r_scbond_it 1.842 r_mcangle_it 1.502 r_mcbond_it 1.322 r_angle_other_deg 0.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.601 r_dihedral_angle_3_deg 12.801 r_dihedral_angle_1_deg 7.218 r_dihedral_angle_4_deg 3.503 r_scangle_it 2.722 r_angle_refined_deg 1.876 r_scbond_it 1.842 r_mcangle_it 1.502 r_mcbond_it 1.322 r_angle_other_deg 0.858 r_symmetry_vdw_other 0.253 r_xyhbond_nbd_refined 0.24 r_nbd_other 0.209 r_symmetry_hbond_refined 0.209 r_nbtor_refined 0.18 r_nbd_refined 0.16 r_symmetry_vdw_refined 0.146 r_chiral_restr 0.09 r_nbtor_other 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 688 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing