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X-ray structure of the Allene Oxide Cyclase from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 10% PEG 3350, 200MM NACL, 100MM PHOSPHATE-CITRATE BUFFER, PH 4.2 HANGING DROP SETUP
Crystal Properties Matthews coefficient Solvent content 2.55 51.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.48 α = 90 b = 99.95 β = 90 c = 106.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2004-09-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 37 95.9 0.07 19.3 7.8 203601
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 94.2 0.39 5.3 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 72.74 100221 5221 95.6 0.174 0.173 0.1727 0.191 0.1908 RANDOM 13.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.09 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.31 r_dihedral_angle_3_deg 12.209 r_dihedral_angle_4_deg 9.383 r_dihedral_angle_1_deg 6.232 r_scangle_it 2.615 r_scbond_it 1.775 r_angle_refined_deg 1.224 r_mcangle_it 1.116 r_mcbond_it 0.81 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.31 r_dihedral_angle_3_deg 12.209 r_dihedral_angle_4_deg 9.383 r_dihedral_angle_1_deg 6.232 r_scangle_it 2.615 r_scbond_it 1.775 r_angle_refined_deg 1.224 r_mcangle_it 1.116 r_mcbond_it 0.81 r_nbtor_refined 0.311 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.119 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.082 r_symmetry_hbond_refined 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4092 Nucleic Acid Atoms Solvent Atoms 556 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling HKL2Map phasing SHELXD phasing SHELXE phasing