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Crystal Structure of Quorum-Quenching N-Acyl Homoserine Lactone Lactonase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 0.1 M TRIS-HCL(PH 7.8), 30% PEG 4000,0.2 M MGCL2, 2 MM HOMOSERINE LACTONE
Crystal Properties Matthews coefficient Solvent content 1.9 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.904 α = 90 b = 55.745 β = 90 c = 73.855 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MIRROR 2005-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44 98.7 0.1 19.4 6.9 23923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 97.4 0.64 3.1 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 44 22664 1218 98.6 0.183 0.181 0.1803 0.22 0.2215 RANDOM 19.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.84 -0.94 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.203 r_dihedral_angle_1_deg 13.355 r_dihedral_angle_3_deg 11.623 r_dihedral_angle_4_deg 10.352 r_scangle_it 3.247 r_scbond_it 1.891 r_mcangle_it 1.361 r_angle_refined_deg 1.324 r_mcbond_it 0.735 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.203 r_dihedral_angle_1_deg 13.355 r_dihedral_angle_3_deg 11.623 r_dihedral_angle_4_deg 10.352 r_scangle_it 3.247 r_scbond_it 1.891 r_mcangle_it 1.361 r_angle_refined_deg 1.324 r_mcbond_it 0.735 r_nbtor_refined 0.309 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.198 r_xyhbond_nbd_refined 0.114 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.087 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1913 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling AMoRE phasing