☰ Navigation Tabs
14-3-3 Protein Beta (Human)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJA PDB ENTRY 1QJA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.05M MGCL2,0.1M HEPES PH7.5, 30% PEG MME 550, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.7 54.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.605 α = 90 b = 123.79 β = 114.98 c = 54.755 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC MIRRORS 2005-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 38.72 97.7 0.11 5.1 4.9 21068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 96.6 0.38 2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QJA 2.5 61.9 19984 1074 97.6 0.217 0.214 0.2219 0.273 0.2786 RANDOM 28.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -1.1 -1.31 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.56 r_dihedral_angle_4_deg 19.065 r_dihedral_angle_3_deg 16.716 r_dihedral_angle_1_deg 5.511 r_scangle_it 2.127 r_scbond_it 1.338 r_angle_refined_deg 1.227 r_mcangle_it 0.896 r_angle_other_deg 0.776 r_mcbond_it 0.579
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.56 r_dihedral_angle_4_deg 19.065 r_dihedral_angle_3_deg 16.716 r_dihedral_angle_1_deg 5.511 r_scangle_it 2.127 r_scbond_it 1.338 r_angle_refined_deg 1.227 r_mcangle_it 0.896 r_angle_other_deg 0.776 r_mcbond_it 0.579 r_nbd_refined 0.226 r_symmetry_vdw_other 0.217 r_nbtor_refined 0.185 r_nbd_other 0.165 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.107 r_symmetry_vdw_refined 0.097 r_nbtor_other 0.086 r_chiral_restr 0.068 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3657 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing