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Crystal structure of Filamin A domain 17 and GPIb alpha cytoplasmic domain complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1V05 PDB ENTRY 1V05
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 1.75M AMMONIUM PHOSPHATE, PH 8.2, AFTER MICROSEEDING: 1.25M AMMONIUM SULFATE PH 8.2
Crystal Properties Matthews coefficient Solvent content 3.62 65.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.9 α = 90 b = 62.8 β = 90 c = 122.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH TOROIDAL MIRROR 2004-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 19.88 86.9 0.09 14 6 12876
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.31 2.45 56.7 0.53 3.13 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1V05 2.32 19.88 12211 645 100 0.216 0.214 0.2135 0.256 0.2554 RANDOM 57.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.78 4.3 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.701 r_dihedral_angle_3_deg 19.462 r_dihedral_angle_4_deg 19.175 r_dihedral_angle_1_deg 6.753 r_scangle_it 4.346 r_mcangle_it 4.17 r_scbond_it 3.095 r_mcbond_it 2.655 r_angle_refined_deg 1.463 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.701 r_dihedral_angle_3_deg 19.462 r_dihedral_angle_4_deg 19.175 r_dihedral_angle_1_deg 6.753 r_scangle_it 4.346 r_mcangle_it 4.17 r_scbond_it 3.095 r_mcbond_it 2.655 r_angle_refined_deg 1.463 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.198 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1553 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing