☰ Navigation Tabs
Crystal structure of the dimeric regulatory domain of mouse diaphaneous-related formin (DRF), mDia1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.25 HANGING DROP VAPOR DIFFUSION; PROTEIN: 11 MG/ML IN 100 MM HEPES, PH 7.25; RESERVOIR: 100 MM HEPES, PH 7.25, 9% PEG3350
Crystal Properties Matthews coefficient Solvent content 4.5 72.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.365 α = 90 b = 121.365 β = 90 c = 95.096 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM 2004-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 46 99.8 0.06 27.3 5.9 61321 -3 55.09
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 97.6 0.57 2.1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 20 59657 1542 99.8 0.197 0.196 0.195 0.236 0.2341 RANDOM 55.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.89 1.44 2.89 -4.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.362 r_dihedral_angle_4_deg 21.05 r_dihedral_angle_3_deg 18.369 r_dihedral_angle_1_deg 5.955 r_scangle_it 3.774 r_scbond_it 2.437 r_angle_refined_deg 1.749 r_mcangle_it 1.424 r_mcbond_it 0.876 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.362 r_dihedral_angle_4_deg 21.05 r_dihedral_angle_3_deg 18.369 r_dihedral_angle_1_deg 5.955 r_scangle_it 3.774 r_scbond_it 2.437 r_angle_refined_deg 1.749 r_mcangle_it 1.424 r_mcbond_it 0.876 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.287 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.22 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.134 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5403 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing