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GTPase like domain of Centaurin Gamma 1 (Human)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RAP PDB ENTRY 2RAP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1M SPG PH 7.0; 30.0% PEG1000; 0.5% DMSO
Crystal Properties Matthews coefficient Solvent content 1.98 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.151 α = 90 b = 31.104 β = 102.22 c = 81.928 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU/MSC 2005-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30.6 95.1 0.07 7.5 5 43169
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 89.9 0.22 2.9 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2RAP 2.1 80.06 8240 413 94.1 0.166 0.163 0.1742 0.225 0.2298 RANDOM 34.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -0.28 1.4 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.621 r_dihedral_angle_4_deg 16.889 r_dihedral_angle_3_deg 13.784 r_dihedral_angle_1_deg 6.684 r_scangle_it 3.172 r_scbond_it 2.153 r_angle_refined_deg 1.528 r_mcangle_it 1.314 r_mcbond_it 1.068 r_angle_other_deg 0.857
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.621 r_dihedral_angle_4_deg 16.889 r_dihedral_angle_3_deg 13.784 r_dihedral_angle_1_deg 6.684 r_scangle_it 3.172 r_scbond_it 2.153 r_angle_refined_deg 1.528 r_mcangle_it 1.314 r_mcbond_it 1.068 r_angle_other_deg 0.857 r_symmetry_hbond_refined 0.296 r_xyhbond_nbd_refined 0.208 r_nbd_refined 0.196 r_nbd_other 0.193 r_symmetry_vdw_other 0.177 r_nbtor_refined 0.176 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.087 r_nbtor_other 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1329 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALE data scaling PHASER phasing