X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MJ0PDB ENTRY 1MJ0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.615% PEG 4000, 200 MM KBR, 100MM TRIS-HCL, PH8.0, pH 7.60
Crystal Properties
Matthews coefficientSolvent content
2.1141.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.579α = 90
b = 72.67β = 90
c = 83.325γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.92599.90.084.1243932

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MJ01.92523178116999.90.1780.1760.227RANDOM17.03
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.470.68
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.487
r_scangle_it5.202
r_scbond_it3.16
r_mcangle_it1.882
r_angle_other_deg1.787
r_angle_refined_deg1.746
r_mcbond_it1.078
r_symmetry_vdw_other0.283
r_nbd_other0.244
r_symmetry_vdw_refined0.243
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.487
r_scangle_it5.202
r_scbond_it3.16
r_mcangle_it1.882
r_angle_other_deg1.787
r_angle_refined_deg1.746
r_mcbond_it1.078
r_symmetry_vdw_other0.283
r_nbd_other0.244
r_symmetry_vdw_refined0.243
r_nbd_refined0.225
r_xyhbond_nbd_refined0.214
r_symmetry_hbond_refined0.202
r_chiral_restr0.135
r_nbtor_other0.095
r_bond_refined_d0.02
r_gen_planes_other0.011
r_gen_planes_refined0.009
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2302
Nucleic Acid Atoms
Solvent Atoms330
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing