Starting Model(s)
| Initial Refinement Model(s) |
|---|
| Type | Source | Accession Code | Details |
|---|
|
experimental model | PDB | 1ISB | WT-FESOD 1ISB.PDB |
Crystallization
| Crystal Properties |
|---|
| Matthews coefficient | Solvent content |
|---|
| 2.11 | 41.36 |
Crystal Data
| Unit Cell |
|---|
| Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 43.5 | α = 90 |
| b = 107.7 | β = 95.02 |
| c = 84.2 | γ = 90 |
| Symmetry |
|---|
| Space Group | P 1 21 1 |
|---|
Diffraction
| Diffraction Experiment |
|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
|---|
| 1 | 1 | x-ray | 110 | IMAGE PLATE | RIGAKU RAXIS IV | GRADED MULTILAYER | | M | SINGLE WAVELENGTH |
| Radiation Source |
|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
|---|
| 1 | ROTATING ANODE | RIGAKU RU200 | | | |
Data Collection
| Overall |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
|---|
| 1 | 1.6 | 20 | 86.3 | 0.07 | | 4 | | 87786 | | -4 | 20.7 |
Refinement
| Statistics |
|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B |
|---|
| X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | WT-FESOD 1ISB.PDB | 1.7 | 19.97 | 79134 | 7776 | 86.3 | 0.207 | 0.207 | 0.2124 | 0.231 | 0.2412 | RANDOM | 16.7 |
| Temperature Factor Modeling |
|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
|---|
| 1.327 | | -2.697 | -3.918 | | 2.591 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| c_dihedral_angle_d | 21.2 |
| c_scangle_it | 2.63 |
| c_scbond_it | 1.94 |
| c_mcangle_it | 1.41 |
| c_angle_deg | 1.2 |
| c_mcbond_it | 1 |
| c_improper_angle_d | 0.82 |
| c_bond_d | 0.005 |
| c_bond_d_na | |
| c_bond_d_prot | |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| c_dihedral_angle_d | 21.2 |
| c_scangle_it | 2.63 |
| c_scbond_it | 1.94 |
| c_mcangle_it | 1.41 |
| c_angle_deg | 1.2 |
| c_mcbond_it | 1 |
| c_improper_angle_d | 0.82 |
| c_bond_d | 0.005 |
| c_bond_d_na | |
| c_bond_d_prot | |
| c_angle_d | |
| c_angle_d_na | |
| c_angle_d_prot | |
| c_angle_deg_na | |
| c_angle_deg_prot | |
| c_dihedral_angle_d_na | |
| c_dihedral_angle_d_prot | |
| c_improper_angle_d_na | |
| c_improper_angle_d_prot | |
| Non-Hydrogen Atoms Used in Refinement |
|---|
| Non-Hydrogen Atoms | Number |
|---|
| Protein Atoms | 6012 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 629 |
| Heterogen Atoms | 4 |
Software
| Software |
|---|
| Software Name | Purpose |
|---|
| CNS | refinement |
| HKL | data reduction |
| HKL | data scaling |
