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Mycobacterium Tuberculosis Epsp Synthase In Unliganded State
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G6T PDB ENTRY 1G6T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.1 1.6M NA ACETATE, pH 6.10
Crystal Properties Matthews coefficient Solvent content 2.14 41.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.864 α = 90 b = 102.864 β = 90 c = 99.512 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH AU-COATED PLANAR, TOROIDAL MIRRORS 2003-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 100 0.11 17.5 5.9 36380 17.73
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.82 100 0.81 2.9 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1G6T 1.8 15 34526 1813 100 0.164 0.162 0.1679 0.205 0.2069 RANDOM 21.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.08 0.16 -0.24
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.735 r_dihedral_angle_1_deg 4.345 r_scbond_it 4.283 r_mcangle_it 3.608 r_mcbond_it 2.108 r_angle_refined_deg 1.888 r_angle_other_deg 0.986 r_symmetry_vdw_other 0.326 r_nbd_other 0.249 r_symmetry_hbond_refined 0.246
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.735 r_dihedral_angle_1_deg 4.345 r_scbond_it 4.283 r_mcangle_it 3.608 r_mcbond_it 2.108 r_angle_refined_deg 1.888 r_angle_other_deg 0.986 r_symmetry_vdw_other 0.326 r_nbd_other 0.249 r_symmetry_hbond_refined 0.246 r_symmetry_vdw_refined 0.238 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.129 r_nbtor_other 0.089 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3058 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing