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Crystal structure of the complete modular teichioic acid phosphorylcholine esterase Pce (CbpE) from Streptococcus pneumoniae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 293 CRYSTALS WERE OBTAINED WITH 4 MICROL OF RESERVOIR SOLUTION (17 % PEG 10000, 0.1 M BIS TRIS PH=5.5 AND 0.1 M AMMONIUM ACETATE), 1 MICROL. OF 1.5 MM N DODECYLPHOSPHORYLCHOLINE, AND 4 MICROL. OF PROTEIN SOLUTION. AT 293 K, CRYSTALS REACHED MAXIMUM DIMENSIONS OF 0.1 X 0.3 X 0.3 MM3 IN 15 30 DAYS., pH 5.50
Crystal Properties Matthews coefficient Solvent content 4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.49 α = 90 b = 58.12 β = 108.29 c = 68.65 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 1.5418, 1.711 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 27.5 95.5 0.11 13.7 6.2 44362 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 2.02 88.5 0.6 1.7 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 27.52 44361 3368 95.4 0.197 0.194 0.2 0.233 0.2366 RANDOM 29.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.608 r_scangle_it 2.379 r_scbond_it 1.548 r_angle_refined_deg 1.225 r_mcangle_it 1.002 r_mcbond_it 0.545 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.608 r_scangle_it 2.379 r_scbond_it 1.548 r_angle_refined_deg 1.225 r_mcangle_it 1.002 r_mcbond_it 0.545 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.123 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4440 Nucleic Acid Atoms Solvent Atoms 432 Heterogen Atoms 113
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling