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Crystal structure of native toluene-4-monooxygenase catalytic effector protein, T4moD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.7 PROTEIN CRYSTALLIZED FROM 975MM SODIUM/POTASSIUM PHOSPHATE PH 4.7, 400 MM NACL AND 50 MM SUCCINATE PH 5.5
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.671 α = 90 b = 86.671 β = 90 c = 144.325 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 37 96.5 0.07 6 1.8 19009 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.11 78.2 0.29 2.5 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 37 17059 1949 97.9 0.248 0.244 0.2445 0.289 0.2811 RANDOM 47.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 -1.06 -2.12 3.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.229 r_scangle_it 4.684 r_scbond_it 2.687 r_mcangle_it 2.116 r_angle_refined_deg 1.585 r_mcbond_it 1.136 r_angle_other_deg 0.852 r_symmetry_hbond_refined 0.494 r_symmetry_vdw_refined 0.356 r_symmetry_vdw_other 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.229 r_scangle_it 4.684 r_scbond_it 2.687 r_mcangle_it 2.116 r_angle_refined_deg 1.585 r_mcbond_it 1.136 r_angle_other_deg 0.852 r_symmetry_hbond_refined 0.494 r_symmetry_vdw_refined 0.356 r_symmetry_vdw_other 0.324 r_nbd_other 0.254 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.088 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1579 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing