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Structure of human 11-beta-hydroxysteroid dehydrogenase in complex with NADP and carbenoxolone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other UNPUBLISHED MODEL OF HUMAN 11BETA HSD1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 0.1 M MGCL2, 15% PEG 3350,, pH 5.50
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.162 α = 90 b = 112.984 β = 90 c = 66.326 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2004-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 61.08 97.1 0.09 12.6 4.7 68824 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 84.6 0.38 2.1 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT UNPUBLISHED MODEL OF HUMAN 11BETA HSD1 2.11 56.52 66821 1953 98 0.19 0.188 0.2023 0.246 0.2618 RANDOM 38.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.43 0.31 -1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.654 r_dihedral_angle_4_deg 13.998 r_dihedral_angle_3_deg 13.838 r_dihedral_angle_1_deg 6.357 r_scangle_it 6.138 r_scbond_it 4.676 r_mcangle_it 2.969 r_mcbond_it 2.01 r_angle_refined_deg 1.607 r_angle_other_deg 0.859
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.654 r_dihedral_angle_4_deg 13.998 r_dihedral_angle_3_deg 13.838 r_dihedral_angle_1_deg 6.357 r_scangle_it 6.138 r_scbond_it 4.676 r_mcangle_it 2.969 r_mcbond_it 2.01 r_angle_refined_deg 1.607 r_angle_other_deg 0.859 r_symmetry_vdw_other 0.214 r_nbd_refined 0.21 r_nbtor_refined 0.18 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.093 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.076 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7439 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 348
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing