X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION9.529320% PEG4000, 0.1M CHES, pH 9.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1542.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.273α = 90
b = 68.273β = 90
c = 97.756γ = 90
Symmetry
Space GroupP 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.10.97ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.375089.40.04716.46.48377542
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.371.4453.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.48107548571837364896.850.1730.1730.1690.206RANDOM19.567
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.20.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.924
r_dihedral_angle_4_deg12.93
r_dihedral_angle_3_deg11.352
r_sphericity_free7.489
r_dihedral_angle_1_deg6.052
r_scangle_it4.687
r_scbond_it3.59
r_sphericity_bonded3.488
r_mcangle_it2.655
r_rigid_bond_restr2.465
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.924
r_dihedral_angle_4_deg12.93
r_dihedral_angle_3_deg11.352
r_sphericity_free7.489
r_dihedral_angle_1_deg6.052
r_scangle_it4.687
r_scbond_it3.59
r_sphericity_bonded3.488
r_mcangle_it2.655
r_rigid_bond_restr2.465
r_mcbond_it2.071
r_angle_refined_deg1.419
r_angle_other_deg1.215
r_mcbond_other0.947
r_nbd_refined0.201
r_symmetry_vdw_other0.193
r_nbd_other0.172
r_nbtor_refined0.171
r_symmetry_vdw_refined0.165
r_symmetry_hbond_refined0.133
r_xyhbond_nbd_refined0.115
r_chiral_restr0.096
r_nbtor_other0.084
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3070
Nucleic Acid Atoms
Solvent Atoms414
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction