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X-ray structure of T.maritima CorA soluble domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 297 25% PEG3350, 0.2M MgCl2, 0.1M Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.4 48.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.995 α = 90 b = 77.995 β = 90 c = 101.609 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 42.6 99.8 0.063 30.9 8.4 27404 27404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 99.3 0.469 3.3 6.3 2662
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 42.6 25999 25999 1378 99.82 0.19766 0.19766 0.1958 0.23334 0.2203 RANDOM 39.118
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.18 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.715 r_dihedral_angle_4_deg 13.097 r_dihedral_angle_3_deg 13.011 r_dihedral_angle_1_deg 4.379 r_scangle_it 4.298 r_scbond_it 2.684 r_mcangle_it 1.977 r_angle_refined_deg 1.728 r_mcbond_it 1.139 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.715 r_dihedral_angle_4_deg 13.097 r_dihedral_angle_3_deg 13.011 r_dihedral_angle_1_deg 4.379 r_scangle_it 4.298 r_scbond_it 2.684 r_mcangle_it 1.977 r_angle_refined_deg 1.728 r_mcbond_it 1.139 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.25 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.201 r_metal_ion_refined 0.128 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1876 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 134
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling SnB phasing