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Crystal structure of protein SO0527 from Shewanella oneidensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 1.0 M Ammonium sulfate
0.1 M Bis-Tris
1 % PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 4.37 71.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.191 α = 90 b = 94.191 β = 90 c = 97.147 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97956 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 50 98.1 0.073 36.4 7.4 15765 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.03 80.6 0.241 2.61 6.2 2438
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.97 50 15730 15730 785 99.81 0.17347 0.17347 0.17237 0.1744 0.19536 0.175 RANDOM 16.588
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.37 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.76 r_dihedral_angle_4_deg 22.7 r_dihedral_angle_3_deg 13.147 r_dihedral_angle_1_deg 5.988 r_scangle_it 3.189 r_scbond_it 2.036 r_angle_refined_deg 1.314 r_mcangle_it 1.204 r_mcbond_it 0.755 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.76 r_dihedral_angle_4_deg 22.7 r_dihedral_angle_3_deg 13.147 r_dihedral_angle_1_deg 5.988 r_scangle_it 3.189 r_scbond_it 2.036 r_angle_refined_deg 1.314 r_mcangle_it 1.204 r_mcbond_it 0.755 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.301 r_symmetry_vdw_refined 0.219 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 834 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling HKL-3000 phasing