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Crystal Structure of HPV E7 CR3 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.9 34.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.908 α = 90 b = 44.935 β = 90 c = 58.67 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD CUSTOM-MADE 2003-06-11 M SINGLE WAVELENGTH 2 1 x-ray 93 CCD CUSTOM-MADE 2003-06-11 M MAD 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.2800 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 1.2832, 1.2836, 1.2800 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 50 98.2 0.08 12140
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.66 0.335
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 50 10931 1188 98.27 0.21246 0.20835 0.2277 0.25232 RANDOM 20.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 -0.06 -1.18
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 26.478 r_scbond_it 18.241 r_mcangle_it 8.997 r_dihedral_angle_1_deg 8.705 r_mcbond_it 7.095 r_angle_refined_deg 0.865 r_angle_other_deg 0.578 r_symmetry_vdw_other 0.311 r_symmetry_hbond_refined 0.288 r_nbd_other 0.262
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 26.478 r_scbond_it 18.241 r_mcangle_it 8.997 r_dihedral_angle_1_deg 8.705 r_mcbond_it 7.095 r_angle_refined_deg 0.865 r_angle_other_deg 0.578 r_symmetry_vdw_other 0.311 r_symmetry_hbond_refined 0.288 r_nbd_other 0.262 r_xyhbond_nbd_refined 0.255 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.216 r_nbtor_other 0.092 r_chiral_restr 0.062 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 800 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction