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Crystal structure of a rmlc-like cupin family protein with a double-stranded beta-helix fold (mj0764) from methanocaldococcus jannaschii at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 277 0.2M (NH4)2SO4, 20.0% PEG-3350, No Buffer, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, pH 6
Crystal Properties Matthews coefficient Solvent content 1.91 39.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.83 α = 90 b = 49.83 β = 90 c = 78.74 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-09-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9796, 0.9797, 1.0000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.08 99.3 0.091 7.84 3.48 12925 12267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 97.2 97.2 0.527 2.23
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.08 12267 628 99.71 0.152 0.15197 0.149 0.161 0.204 0.2098 RANDOM 20.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.3 0.59 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.787 r_dihedral_angle_4_deg 24.987 r_dihedral_angle_3_deg 10.286 r_dihedral_angle_1_deg 7.208 r_scangle_it 6.923 r_scbond_it 5.057 r_mcangle_it 2.69 r_mcbond_it 2.307 r_angle_refined_deg 1.441 r_angle_other_deg 0.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.787 r_dihedral_angle_4_deg 24.987 r_dihedral_angle_3_deg 10.286 r_dihedral_angle_1_deg 7.208 r_scangle_it 6.923 r_scbond_it 5.057 r_mcangle_it 2.69 r_mcbond_it 2.307 r_angle_refined_deg 1.441 r_angle_other_deg 0.743 r_mcbond_other 0.582 r_nbd_refined 0.193 r_symmetry_vdw_other 0.189 r_nbd_other 0.18 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.174 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_refined 0.093 r_chiral_restr 0.092 r_nbtor_other 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 886 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SOLVE phasing