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T4 Lysozyme mutant L99A at 150 MPa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L90 pdb code 1L90
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 ~2.0 M Na/K phosphate, 50mM beta-mercaptoethanol, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.77 55.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.68 α = 90 b = 60.68 β = 90 c = 95.805 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC QUANTUM 4 mirrors 2004-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 52.56 96.18 0.055 11333 11333
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.155 98.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT pdb code 1L90 2.1 52.56 11333 11333 568 96.18 0.16684 0.16684 0.16449 0.21365 0.1787 RANDOM 25.617
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.06 -0.12 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.396 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_4_deg 11.537 r_scangle_it 5.248 r_dihedral_angle_1_deg 5.093 r_scbond_it 3.373 r_mcangle_it 1.805 r_angle_refined_deg 1.441 r_mcbond_it 1.199 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.396 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_4_deg 11.537 r_scangle_it 5.248 r_dihedral_angle_1_deg 5.093 r_scbond_it 3.373 r_mcangle_it 1.805 r_angle_refined_deg 1.441 r_mcbond_it 1.199 r_nbtor_refined 0.306 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.177 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.159 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1289 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement Adxv data processing SCALEPACK data scaling