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T4 Lysozyme mutant L99A at 200 MPa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L90 pdb entry 1L90
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 ~2.0 Molar Na/K phosphates, 50 mM beta-mercaptoethanol, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293, temperature 20K
Crystal Properties Matthews coefficient Solvent content 2.76 55.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.604 α = 90 b = 60.604 β = 90 c = 95.708 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD ADSC QUANTUM 4 2004-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 0.9174 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 52.49 92.9 0.034 11469 11469
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.155 95.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1L90 2.1 52.49 11479 10923 556 92.99 0.15983 0.15983 0.15785 0.161 0.19819 0.1628 RANDOM 25.552
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.217 r_dihedral_angle_3_deg 15.618 r_dihedral_angle_4_deg 9.669 r_scangle_it 4.983 r_dihedral_angle_1_deg 4.897 r_scbond_it 3.165 r_mcangle_it 1.675 r_angle_refined_deg 1.294 r_mcbond_it 1.085 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.217 r_dihedral_angle_3_deg 15.618 r_dihedral_angle_4_deg 9.669 r_scangle_it 4.983 r_dihedral_angle_1_deg 4.897 r_scbond_it 3.165 r_mcangle_it 1.675 r_angle_refined_deg 1.294 r_mcbond_it 1.085 r_nbtor_refined 0.304 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.153 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1289 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement Adxv data processing SCALEPACK data scaling