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C.BclI, Control Element of the BclI Restriction-Modification System
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 25% (w/v) Polyethylene glyco 400, 25 mM ammonium sulfate, 50 mM citrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.19 43.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.205 α = 90 b = 65.016 β = 90 c = 73.296 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 58 cm long, Pt-coated, fused silica, vertical focusmirror, Cyclindrically bent triangular Si(111) asymmetric cut, horizontal focus monochromator 2002-03-27 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 4 2002-05-24 M MAD 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.08 SSRL BL7-1 2 SYNCHROTRON SSRL BEAMLINE BL1-5 1.0061, 1.0088, 0.9076 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.54 99 98.3 0.051 38 5.9 44934 44934 28.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.54 1.56 68.4 68.4 0.457 3.2 1526
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.543 19.741 44881 44881 2259 99.453 0.167 0.167 0.1652 0.1791 0.2005 0.2095 random 20.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.008 -0.001 -0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.239 r_dihedral_angle_4_deg 18.859 r_dihedral_angle_3_deg 12.008 r_scangle_it 6.081 r_dihedral_angle_1_deg 3.986 r_scbond_it 3.876 r_mcangle_it 3.414 r_scangle_other 2.814 r_mcbond_it 2.802 r_mcangle_other 2.022
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.239 r_dihedral_angle_4_deg 18.859 r_dihedral_angle_3_deg 12.008 r_scangle_it 6.081 r_dihedral_angle_1_deg 3.986 r_scbond_it 3.876 r_mcangle_it 3.414 r_scangle_other 2.814 r_mcbond_it 2.802 r_mcangle_other 2.022 r_angle_other_deg 1.441 r_angle_refined_deg 1.409 r_scbond_other 1.323 r_mcbond_other 0.721 r_symmetry_vdw_refined 0.317 r_symmetry_vdw_other 0.268 r_nbd_refined 0.24 r_nbtor_refined 0.182 r_nbd_other 0.176 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.139 r_nbtor_other 0.082 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_symmetry_hbond_other 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2461 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection