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p53N (fragment 33-60) bound to RPA70N
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B29
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.9 298 Na3 Citrate, Hepes, pH 7.9, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.90
Crystal Properties Matthews coefficient Solvent content 1.96 37.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.46 α = 90 b = 50.38 β = 90 c = 52.32 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV RIGAKU/MSC CONFOCAL MULTILYER OPTICS 2004-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 98.2 0.046 32.5 4.5 17517 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 83.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2B29 1.6 20 16581 16581 893 98.2 0.205 0.204 0.202 0.239 0.2363 RANDOM 30.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.91 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.872 r_scangle_it 5.508 r_scbond_it 3.17 r_mcangle_it 2.248 r_angle_refined_deg 1.755 r_mcbond_it 1.243 r_angle_other_deg 0.917 r_symmetry_vdw_other 0.32 r_nbd_other 0.257 r_nbd_refined 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.872 r_scangle_it 5.508 r_scbond_it 3.17 r_mcangle_it 2.248 r_angle_refined_deg 1.755 r_mcbond_it 1.243 r_angle_other_deg 0.917 r_symmetry_vdw_other 0.32 r_nbd_other 0.257 r_nbd_refined 0.25 r_symmetry_hbond_refined 0.246 r_xyhbond_nbd_refined 0.202 r_symmetry_vdw_refined 0.113 r_chiral_restr 0.107 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1092 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing