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Thermus thermophilus Glucose/Galactose Binding Protein Bound With Galactose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 290 10% (w/v) Isopropanol, 0.1M Sodium Citrate pH5.6, 10% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.376 α = 90 b = 134.958 β = 90 c = 159.719 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2005-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97917 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 103 95.6 0.061 6.5 372145 352612
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.57 1.63 64 64.2 0.439 2 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.56 103.14 372145 352491 17751 94.72 0.176 0.176 0.174 0.205 0.227 RANDOM 19.486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.65 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.784 r_dihedral_angle_4_deg 15.709 r_dihedral_angle_3_deg 12.014 r_dihedral_angle_1_deg 5.774 r_scangle_it 2.736 r_scbond_it 1.936 r_angle_refined_deg 1.271 r_mcangle_it 1.089 r_mcbond_it 0.975 r_angle_other_deg 0.823
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.784 r_dihedral_angle_4_deg 15.709 r_dihedral_angle_3_deg 12.014 r_dihedral_angle_1_deg 5.774 r_scangle_it 2.736 r_scbond_it 1.936 r_angle_refined_deg 1.271 r_mcangle_it 1.089 r_mcbond_it 0.975 r_angle_other_deg 0.823 r_nbd_refined 0.226 r_symmetry_vdw_other 0.224 r_nbd_other 0.182 r_nbtor_refined 0.179 r_mcbond_other 0.165 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.16 r_symmetry_vdw_refined 0.15 r_xyhbond_nbd_other 0.143 r_nbtor_other 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18208 Nucleic Acid Atoms Solvent Atoms 2625 Heterogen Atoms 72
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction CCP4 data scaling SHELXL-97 phasing