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Thermus thermophilus Glucose/Galactose Binding Protein With Bound Glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 290 10% (w/v) Isopropanol, 0.1M Sodium Citrate pH5.6, 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.643 α = 90 b = 134.874 β = 90 c = 159.547 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2005-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97917 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 95.6 0.086 5.4 181610
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 82.4 82.4 0.455 2.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 50 2.4 181451 9116 95.6 0.187 0.186 0.185 0.1941 0.225 0.2341 RANDOM 23.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 -0.97 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.217 r_dihedral_angle_4_deg 15.417 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 6.108 r_scangle_it 2.623 r_scbond_it 1.837 r_angle_refined_deg 1.346 r_mcangle_it 1.08 r_mcbond_it 0.952 r_angle_other_deg 0.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.217 r_dihedral_angle_4_deg 15.417 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 6.108 r_scangle_it 2.623 r_scbond_it 1.837 r_angle_refined_deg 1.346 r_mcangle_it 1.08 r_mcbond_it 0.952 r_angle_other_deg 0.847 r_symmetry_vdw_other 0.238 r_nbd_refined 0.213 r_xyhbond_nbd_other 0.213 r_nbtor_refined 0.178 r_nbd_other 0.177 r_mcbond_other 0.167 r_symmetry_vdw_refined 0.157 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.089 r_nbtor_other 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18208 Nucleic Acid Atoms Solvent Atoms 1937 Heterogen Atoms 72
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SHELXL-97 phasing