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Crystal structure of Mycobacterium tuberculosis enoyl reductase (InhA) inhibited by 5-octyl-2-phenoxyphenol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 295 PEG 4000, DMSO, ammonium acetate, NAD+, ADA , pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 45.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.341 α = 90 b = 100.293 β = 90 c = 379.275 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.1 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 15 96 46065 44393 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.666 96.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 15 46065 44393 2370 96.37 0.228 0.225 0.225 0.2313 0.294 0.2992 RANDOM 39.532
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -4.95 5.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.062 r_dihedral_angle_4_deg 21.218 r_dihedral_angle_3_deg 17.832 r_dihedral_angle_1_deg 4.877 r_mcangle_it 3.147 r_scangle_it 2.646 r_mcbond_it 2.414 r_scbond_it 1.792 r_angle_refined_deg 1.431 r_angle_other_deg 1.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.062 r_dihedral_angle_4_deg 21.218 r_dihedral_angle_3_deg 17.832 r_dihedral_angle_1_deg 4.877 r_mcangle_it 3.147 r_scangle_it 2.646 r_mcbond_it 2.414 r_scbond_it 1.792 r_angle_refined_deg 1.431 r_angle_other_deg 1.008 r_mcbond_other 0.501 r_symmetry_hbond_refined 0.315 r_symmetry_vdw_refined 0.232 r_nbd_refined 0.221 r_symmetry_vdw_other 0.212 r_nbd_other 0.194 r_xyhbond_nbd_refined 0.183 r_nbtor_refined 0.181 r_chiral_restr 0.111 r_symmetry_hbond_other 0.102 r_nbtor_other 0.09 r_xyhbond_nbd_other 0.043 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11398 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms 308
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing