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Solution structure of the NOD1 Caspase Activating and Recruitment Domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1.4mM NOD1 CARD 15N, 13C; 25mM phosphate buffer NA; 100mM NaCl, 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl 7 ambient 303 2 3D_15N-separated_NOESY 1.4mM NOD1 CARD 15N; 25mM phosphate buffer NA; 100mM NaCl, 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl 7 ambient 303 3 3D methyl selected NOESY-HSQC 1.4mM NOD1 CARD 15N, 13C; 25mM phosphate buffer NA; 100mM NaCl, 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl 7 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics, refinement in explicit water NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 2.3 F.Delaglio, S.Grzesiek, G.W.Vuister, G.Zhu, J.Pfeifer, A.Bax 2 collection VNMR 6.1C B.A.Johnson, R.A.Blevins 3 structure solution CNS 1.1 4 structure solution ARIA 2.0 M.Habeck, W.Rieping, J.P.Linge, M.Nilges 5 processing NMRDraw 2.3 F.Delaglio 6 refinement ARIA 2.0 M.Habeck, W.Rieping, J.P.Linge, M.Nilges