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Crystal structure of the protein-protein complex between F82Y cytochrome c and cytochrome c peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 PEG 3350, NaCl, BOG, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.789 α = 90 b = 51.832 β = 90 c = 183.645 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2004-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 1.0 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 30 95.5 0.147 4.3 8319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 91 0.377 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.02 20 8258 449 100 0.277 0.277 0.277 0.2575 0.268 RANDOM 5.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 -1.16 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.049 r_dihedral_angle_4_deg 25.386 r_dihedral_angle_3_deg 25.192 r_scangle_it 6.027 r_scbond_it 4.033 r_angle_refined_deg 2.571 r_mcangle_it 2.325 r_dihedral_angle_1_deg 1.705 r_mcbond_it 1.331 r_symmetry_hbond_refined 0.603
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.049 r_dihedral_angle_4_deg 25.386 r_dihedral_angle_3_deg 25.192 r_scangle_it 6.027 r_scbond_it 4.033 r_angle_refined_deg 2.571 r_mcangle_it 2.325 r_dihedral_angle_1_deg 1.705 r_mcbond_it 1.331 r_symmetry_hbond_refined 0.603 r_symmetry_vdw_refined 0.271 r_xyhbond_nbd_refined 0.217 r_nbd_refined 0.202 r_chiral_restr 0.189 r_bond_refined_d 0.026 r_gen_planes_refined 0.023
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3218 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 86
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction AMoRE phasing