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Crystal Structure of the Protein-Protein Complex between F82S cytochrome c and cytochrome c peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 PEG 3350, NaCl, BOG, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.575 α = 90 b = 113.448 β = 104.55 c = 88.002 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 2004-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1 NSLS X25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 20 20178 979 100 0.285 0.285 0.284 0.2898 0.306 RANDOM 18.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.21 -3.11 10.08 -8.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.078 r_dihedral_angle_4_deg 21.969 r_dihedral_angle_3_deg 20.197 r_scangle_it 5.922 r_scbond_it 4.223 r_mcangle_it 2.691 r_angle_refined_deg 2.028 r_mcbond_it 1.547 r_dihedral_angle_1_deg 1.416 r_symmetry_vdw_refined 0.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.078 r_dihedral_angle_4_deg 21.969 r_dihedral_angle_3_deg 20.197 r_scangle_it 5.922 r_scbond_it 4.223 r_mcangle_it 2.691 r_angle_refined_deg 2.028 r_mcbond_it 1.547 r_dihedral_angle_1_deg 1.416 r_symmetry_vdw_refined 0.185 r_nbd_refined 0.177 r_chiral_restr 0.144 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.11 r_gen_planes_refined 0.023 r_bond_refined_d 0.018
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6424 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 172
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction AMoRE phasing