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Crystal Structure of the C-terminal WRKY domainof AtWRKY1, an SA-induced and partially NPR1-dependent transcription factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 succinic acid, Tris HCl, PEG MME 2000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.34 47.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.552 α = 90 b = 45.552 β = 90 c = 68.962 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 1.24 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29 97.9 0.091 11069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 95.5 95.5 0.354
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 20 11281 11062 530 98.05 0.18 0.18 0.179 0.204 0.224 RANDOM 17.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.738 r_scangle_it 4.014 r_scbond_it 2.486 r_mcangle_it 1.887 r_angle_refined_deg 1.606 r_mcbond_it 1.051 r_angle_other_deg 0.865 r_symmetry_vdw_refined 0.511 r_symmetry_vdw_other 0.334 r_nbd_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.738 r_scangle_it 4.014 r_scbond_it 2.486 r_mcangle_it 1.887 r_angle_refined_deg 1.606 r_mcbond_it 1.051 r_angle_other_deg 0.865 r_symmetry_vdw_refined 0.511 r_symmetry_vdw_other 0.334 r_nbd_refined 0.291 r_nbd_other 0.28 r_xyhbond_nbd_refined 0.21 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.095 r_nbtor_other 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_metal_ion_refined 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 619 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 9
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection OASIS phasing