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Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 295 PEG 8000, Cacodylate, Acetate, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.183 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.603 α = 90 b = 115.176 β = 90 c = 45.525 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 KOHZU: Double Crystal Si(111) 2004-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979594 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 66.67 99.6 0.092 0.092 6.1 8 39246 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.81 96.1 0.887 0.887 0.7 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 50 39373 37143 1995 99.28 0.21541 0.21419 0.23759 0.2651 RANDOM 11.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 0.4 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.838 r_dihedral_angle_4_deg 23.085 r_dihedral_angle_3_deg 13.369 r_dihedral_angle_1_deg 4.81 r_scangle_it 3.729 r_scbond_it 2.609 r_angle_refined_deg 1.585 r_mcangle_it 1.522 r_mcbond_it 1.29 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.838 r_dihedral_angle_4_deg 23.085 r_dihedral_angle_3_deg 13.369 r_dihedral_angle_1_deg 4.81 r_scangle_it 3.729 r_scbond_it 2.609 r_angle_refined_deg 1.585 r_mcangle_it 1.522 r_mcbond_it 1.29 r_nbtor_refined 0.299 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.184 r_symmetry_vdw_refined 0.15 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2184 Nucleic Acid Atoms 444 Solvent Atoms 222 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling CNS phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction CCP4 data scaling