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Synapse associated protein 97 PDZ2 domain variant C378G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2M Sodium acetate, 0.1M Tris-HCl, 30% PEG4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.9 34.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.22 α = 90 b = 52.14 β = 102.74 c = 52.64 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.519 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.44 20 96.6 0.029 37.19 6219 6219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.44 2.59 91.6 90.8 0.094 17.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.44 19.65 6219 6219 311 100 0.186 0.186 0.18 0.1797 0.295 0.2941 RANDOM 16.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 0.63 -0.33 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.308 r_dihedral_angle_3_deg 16.381 r_dihedral_angle_1_deg 6.835 r_scangle_it 3.212 r_scbond_it 2.11 r_angle_refined_deg 1.56 r_mcangle_it 1.426 r_mcbond_it 0.82 r_nbtor_refined 0.31 r_nbd_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.308 r_dihedral_angle_3_deg 16.381 r_dihedral_angle_1_deg 6.835 r_scangle_it 3.212 r_scbond_it 2.11 r_angle_refined_deg 1.56 r_mcangle_it 1.426 r_mcbond_it 0.82 r_nbtor_refined 0.31 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.187 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1381 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data scaling