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Crystal structure of a human malic enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 PEG 1K, Glycerol, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 54.519791
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.505 α = 90 b = 136.963 β = 121.75 c = 117.84 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.979 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 37.45 97.8 71047 69400
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.64 97.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 37.3 65880 3520 97.68 0.20984 0.20984 0.2074 0.2507 0.2559 0.2953 RANDOM 60.395
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.82 -3.12 2.28 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.739 r_dihedral_angle_4_deg 19.715 r_dihedral_angle_3_deg 18.007 r_scangle_it 7.723 r_dihedral_angle_1_deg 5.965 r_scbond_it 5.406 r_mcangle_it 3.06 r_mcbond_it 1.837 r_angle_refined_deg 1.43 r_angle_other_deg 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.739 r_dihedral_angle_4_deg 19.715 r_dihedral_angle_3_deg 18.007 r_scangle_it 7.723 r_dihedral_angle_1_deg 5.965 r_scbond_it 5.406 r_mcangle_it 3.06 r_mcbond_it 1.837 r_angle_refined_deg 1.43 r_angle_other_deg 0.91 r_mcbond_other 0.602 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.228 r_symmetry_hbond_refined 0.192 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.186 r_nbd_other 0.18 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.09 r_nbtor_other 0.089 r_xyhbond_nbd_other 0.018 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11920 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling PHASER phasing