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Crystal Structure of the PA5185 protein from Pseudomonas Aeruginosa Strain PAO1.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.1M Ammonium Sulphate, 0.1M Bis-Tris pH 5.5, 23% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 241.661 α = 90 b = 64.384 β = 105.4 c = 117.469 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirror 2004-05-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97943, 0.97929, 0.96420 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 36.94 99.8 0.066 12.5 4.1 68671 68671 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 98.9 0.348 2.2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 36.94 65081 65081 3473 99.96 0.20653 0.20402 0.2609 0.25334 0.2578 RANDOM 42.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 0.2 -0.1 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.869 r_dihedral_angle_4_deg 18.327 r_dihedral_angle_3_deg 17.686 r_dihedral_angle_1_deg 7.622 r_scangle_it 4.835 r_scbond_it 3.408 r_angle_refined_deg 1.904 r_mcangle_it 1.685 r_mcbond_it 0.992 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.869 r_dihedral_angle_4_deg 18.327 r_dihedral_angle_3_deg 17.686 r_dihedral_angle_1_deg 7.622 r_scangle_it 4.835 r_scbond_it 3.408 r_angle_refined_deg 1.904 r_mcangle_it 1.685 r_mcbond_it 0.992 r_nbtor_refined 0.319 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.227 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.133 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12500 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing RESOLVE phasing SHARP phasing ARP/wARP model building CCP4 phasing SHELXE model building O model building Coot model building