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Crystal Structure of the TC10 GppNHp complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other TC10 GDP (unpublished)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MES, PEG 3350, NaCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 51.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.69 α = 90 b = 82.2 β = 90 c = 114.31 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 20 99.3 0.047 23.34 5.7 12449 12449 58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.7 100 0.317 5.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT TC10 GDP (unpublished) 2.65 19.84 11826 11826 623 100 0.2127 0.21279 0.21013 0.2292 0.25994 0.2706 RANDOM 32.466
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.81 -1.79 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.518 r_scangle_it 2.541 r_angle_refined_deg 1.755 r_scbond_it 1.616 r_mcangle_it 1.185 r_angle_other_deg 0.951 r_mcbond_it 0.649 r_symmetry_vdw_other 0.251 r_nbd_other 0.227 r_symmetry_vdw_refined 0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.518 r_scangle_it 2.541 r_angle_refined_deg 1.755 r_scbond_it 1.616 r_mcangle_it 1.185 r_angle_other_deg 0.951 r_mcbond_it 0.649 r_symmetry_vdw_other 0.251 r_nbd_other 0.227 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.223 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.096 r_nbtor_other 0.091 r_metal_ion_refined 0.084 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2856 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement ProDC data collection XDS data scaling MOLREP phasing