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Structure of a flavodoxin from Aquifex aeolicus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 Na-HEPES, Na Citrate, glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.3 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.846 α = 90 b = 112.846 β = 90 c = 150.648 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD CUSTOM-MADE SBC3 2005-05-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97911, 0.97924 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 36 99.6 43827 43827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 98.8 0.72 1.8 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 36 43765 41563 2202 99.62 0.17396 0.17396 0.17079 0.23519 0.2501 RANDOM 29.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 0.9 1.79 -2.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.96 r_dihedral_angle_4_deg 20.942 r_dihedral_angle_3_deg 20.392 r_dihedral_angle_1_deg 6.99 r_scangle_it 3.631 r_scbond_it 2.706 r_angle_refined_deg 1.717 r_mcangle_it 1.249 r_mcbond_it 0.968 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.96 r_dihedral_angle_4_deg 20.942 r_dihedral_angle_3_deg 20.392 r_dihedral_angle_1_deg 6.99 r_scangle_it 3.631 r_scbond_it 2.706 r_angle_refined_deg 1.717 r_mcangle_it 1.249 r_mcbond_it 0.968 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.269 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.178 r_chiral_restr 0.137 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8633 Nucleic Acid Atoms Solvent Atoms 420 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELX phasing RESOLVE phasing DM phasing Coot model building O model building ARP/wARP model building