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Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, Average Structure
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 2.7mM C27A ScYLV, 100mM KCl, 5mM MgCl2 90% H2O/10% D2O 100mM KCl, 5mM MgCl2 6.0 ambient 283 2 2D NOESY 2.7mM C27A ScYLV, 100mM KCl, 5mM MgCl2 100% D2O 100mM KCl, 5mM MgCl2 6.0 ambient 298 3 2D TOCSY 2.7mM C27A ScYLV, 100mM KCl, 5mM MgCl2 100% D2O 100mM KCl, 5mM MgCl2 6.0 ambient 298 4 TROSY 2.7mM C27A ScYLV, 100mM KCl, 5mM MgCl2, 15 mg/ml PF1 phage 100% D2O 100mM KCl, 5mM MgCl2 6.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500
NMR Refinement Method Details Software simulated annealing starting with random coordinates followed by refinement with residual
dipolar couplings NMRPipe
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Mac OS X version F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax 2 data analysis Sparky 3 T. D. Goddard and D. G. Kneller 3 structure solution XPLOR-NIH 2.10 G. Marius Clore , John Kuszewski, Charles D. Schwieters, and Nico Tjandra 4 refinement XPLOR-NIH 2.10 G. Marius Clore , John Kuszewski, Charles D. Schwieters, and Nico Tjandra