☰ Navigation Tabs
Crystal structure of Plasmodium Yoelii Adenosine deaminase (PY02076)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 300 20% PEG 3350, 0.1 M Na cacodylate pH 5.5, 0.2 M MgCl2, 10 mM CoCl2, VAPOR DIFFUSION, temperature 300 K, pH 5.50
Crystal Properties Matthews coefficient Solvent content 2.5 50.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.719 α = 90 b = 90.332 β = 90 c = 137.086 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV VERIMAX 2005-07-14 M SINGLE WAVELENGTH 2 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 2,1 2.02 42.9 99.7 0.103 0.103 7.2 5.6 55108 55046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.02 2.05 99.1 0.699 0.699 2.13 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.02 42.9 54132 54132 773 99.7 0.197 0.196 0.1958 0.246 0.1995 RANDOM 26.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.34 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.063 r_dihedral_angle_4_deg 22.944 r_dihedral_angle_3_deg 16.304 r_dihedral_angle_1_deg 6.549 r_scangle_it 3.839 r_scbond_it 2.579 r_mcangle_it 1.697 r_angle_refined_deg 1.686 r_mcbond_it 1.038 r_metal_ion_refined 0.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.063 r_dihedral_angle_4_deg 22.944 r_dihedral_angle_3_deg 16.304 r_dihedral_angle_1_deg 6.549 r_scangle_it 3.839 r_scbond_it 2.579 r_mcangle_it 1.697 r_angle_refined_deg 1.686 r_mcbond_it 1.038 r_metal_ion_refined 0.362 r_symmetry_hbond_refined 0.327 r_symmetry_vdw_refined 0.326 r_nbtor_refined 0.306 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.111 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5866 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction HKL-2000 data scaling SOLVE phasing RESOLVE phasing ARP/wARP model building