☰ Navigation Tabs
Loose Dimer of a Bacillus subtilis Nitric Oxide Synthase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M7Z PDB Entry 1M7Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 Na Cacoldylate, Potassium Acetate, Peg4K, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.7 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.314 α = 90 b = 93.211 β = 90 c = 118.546 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 CCD ADSC QUANTUM 4 2001-10-22 M SINGLE WAVELENGTH 2 1 x-ray 193 CCD ADSC QUANTUM 4 2004-06-24 M SINGLE WAVELENGTH 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 0.92 CHESS F2 2 SYNCHROTRON NSLS BEAMLINE X26C 0.93 NSLS X26C 3 SYNCHROTRON NSLS BEAMLINE X12C 0.9 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.6 30 98.4 23234 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.65 93.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1M7Z 2.6 29.62 1 23234 1174 95 0.275 0.2756 0.2741 0.28969 RANDOM 60.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.15 -2.25 7.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.376 r_dihedral_angle_4_deg 23.022 r_dihedral_angle_3_deg 14.611 r_scangle_it 5.643 r_scbond_it 3.795 r_mcangle_it 2.541 r_angle_refined_deg 1.812 r_mcbond_it 1.522 r_dihedral_angle_1_deg 1.256 r_symmetry_vdw_refined 0.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.376 r_dihedral_angle_4_deg 23.022 r_dihedral_angle_3_deg 14.611 r_scangle_it 5.643 r_scbond_it 3.795 r_mcangle_it 2.541 r_angle_refined_deg 1.812 r_mcbond_it 1.522 r_dihedral_angle_1_deg 1.256 r_symmetry_vdw_refined 0.259 r_nbd_refined 0.242 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.116 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5737 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing