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Crystal structure of Lmo0035 protein (46906266) from LISTERIA MONOCYTOGENES 4b F2365 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 277 15.0% Glycerol, 0.17M NH4OAc, 25.5% PEG-4000, 0.1M Citrate pH 5.6 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.02 39.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.315 α = 90 b = 101.397 β = 90 c = 120.151 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-07-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97932, 0.90497 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.46 100 0.07 0.07 7.5 3.7 110766
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 0.406 0.406 1.8 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.45 105143 5535 100 0.14 0.1495 0.168 0.1758 RANDOM 15.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.27 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.852 r_dihedral_angle_4_deg 20.373 r_dihedral_angle_3_deg 11.525 r_dihedral_angle_1_deg 5.96 r_scangle_it 3.334 r_scbond_it 2.345 r_angle_refined_deg 1.628 r_mcangle_it 1.418 r_mcbond_it 1.076 r_angle_other_deg 1.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.852 r_dihedral_angle_4_deg 20.373 r_dihedral_angle_3_deg 11.525 r_dihedral_angle_1_deg 5.96 r_scangle_it 3.334 r_scbond_it 2.345 r_angle_refined_deg 1.628 r_mcangle_it 1.418 r_mcbond_it 1.076 r_angle_other_deg 1.015 r_mcbond_other 0.295 r_symmetry_vdw_other 0.271 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.198 r_nbd_other 0.192 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.099 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5708 Nucleic Acid Atoms Solvent Atoms 1059 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELX phasing SHARP phasing