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Crystal Structure of Maf-like Protein Tbru21784AAA from T.brucei
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 298 PEG 20K, MnSO4, NaoAc, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.068 α = 90 b = 97.068 β = 90 c = 48.894 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-04-03 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2005-05-15 M MAD 3 1 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9791 ALS 8.2.1 2 SYNCHROTRON SSRL BEAMLINE BL1-5 0.9794, 0.9796, 0.9537 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 18 99.8 0.073 0.073 6.5 7 15517 2.3 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.11 99.9 100 0.224 0.224 2.6 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 18 15471 771 99.5 0.199 0.199 0.197 0.2056 0.231 0.2062 RANDOM 25.606
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.387 r_dihedral_angle_4_deg 22.75 r_dihedral_angle_3_deg 13.663 r_dihedral_angle_1_deg 5.219 r_scangle_it 2.94 r_scbond_it 1.862 r_mcangle_it 1.109 r_angle_refined_deg 1.071 r_mcbond_it 0.695 r_nbtor_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.387 r_dihedral_angle_4_deg 22.75 r_dihedral_angle_3_deg 13.663 r_dihedral_angle_1_deg 5.219 r_scangle_it 2.94 r_scbond_it 1.862 r_mcangle_it 1.109 r_angle_refined_deg 1.071 r_mcbond_it 0.695 r_nbtor_refined 0.291 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.182 r_symmetry_hbond_refined 0.124 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1514 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 13
Software Software Software Name Purpose SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection CCP4 data scaling