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Ternary Complex of hPoli with DNA and dCTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T3N PDB ENTRY 1T3N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 16% PEG 5K MME, 0.4 M Ammonium Sulfate, 0.1 M MES
buffer, pH 6.5, hanging drop, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.7 54.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.114 α = 90 b = 98.114 β = 90 c = 202.823 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2004-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99 0.08 15 9.8 20339
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.437 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1T3N 2.5 50 20339 2027 98.1 0.228 0.228 0.272 0.2618 RANDOM 44.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.46 0.93 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.347 r_scangle_it 6.253 r_scbond_it 4.468 r_mcangle_it 3.335 r_angle_refined_deg 3.19 r_mcbond_it 1.884 r_symmetry_hbond_refined 0.38 r_symmetry_vdw_refined 0.337 r_nbd_refined 0.302 r_xyhbond_nbd_refined 0.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.347 r_scangle_it 6.253 r_scbond_it 4.468 r_mcangle_it 3.335 r_angle_refined_deg 3.19 r_mcbond_it 1.884 r_symmetry_hbond_refined 0.38 r_symmetry_vdw_refined 0.337 r_nbd_refined 0.302 r_xyhbond_nbd_refined 0.246 r_chiral_restr 0.208 r_bond_refined_d 0.05 r_gen_planes_refined 0.016 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2874 Nucleic Acid Atoms 322 Solvent Atoms 79 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing