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Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with Cocaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AJS PDB ENTRY 2AJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295 PEG 4000, ammonium formate, sodium acetate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 46.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.254 α = 90 b = 117.32 β = 90 c = 85.217 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0688 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.5 0.052 72094 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.54 97.7 0.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AJS 1.5 48.22 68409 3661 100 0.18407 0.18183 0.1825 0.22684 0.2271 RANDOM 28.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.91 -0.3 1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.825 r_dihedral_angle_4_deg 17.914 r_dihedral_angle_3_deg 13.038 r_dihedral_angle_1_deg 6.88 r_sphericity_free 6.085 r_scangle_it 4.363 r_sphericity_bonded 4.321 r_scbond_it 3.087 r_mcangle_it 2.452 r_rigid_bond_restr 1.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.825 r_dihedral_angle_4_deg 17.914 r_dihedral_angle_3_deg 13.038 r_dihedral_angle_1_deg 6.88 r_sphericity_free 6.085 r_scangle_it 4.363 r_sphericity_bonded 4.321 r_scbond_it 3.087 r_mcangle_it 2.452 r_rigid_bond_restr 1.913 r_mcbond_it 1.593 r_angle_refined_deg 1.571 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.195 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.112 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3416 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement