2AJN
NMR structure of the in-plane membrane anchor domain [1-28] of the monotopic NonStructural Protein 5A (NS5A) from the Bovine Viral Diarrhea Virus (BVDV)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 303 | |
2 | 2D NOESY | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 303 | |
3 | 1H 13C HSQC | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 303 | |
4 | DQF-COSY | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 303 | |
5 | 2D TOCSY | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 313 | |
6 | 2D NOESY | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 313 | |
7 | 1H 13C HSQC | 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2, 50% H2O | 50% TFE-d2, 50% H2O | null | 4.5 | ambient | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing and energy minimization | XPLOR-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | minimized average structure |
Conformers Calculated Total Number | 1 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | XPLOR-NIH | 2.0.6 | Brunger, A.T. |
2 | processing | VNMR | 6.1 | VARIAN |
3 | data analysis | Sparky | 3.110 | Goddard T.D. and Kneller D.G. |
4 | data analysis | PROCHECK-NMR | 3.5.4 | Laskowski, R.A. and MacArthur, M. |
5 | refinement | XPLOR-NIH | 2.0.6 | Brunger, A.T. |