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NMR structure of the in-plane membrane anchor domain [1-28] of the monotopic Non Structural Protein 5A (NS5A) of Bovine Viral Diarrhea Virus (BVDV)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D TOCSY 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 303 2 2D NOESY 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 303 3 1H 13C HSQC 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 303 4 2D TOCSY 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 313 5 2D NOESY 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 313 6 1H 13C HSQC 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 313 7 DQF-COSY 2 mM BVDV NS5A[1-28], 50% 2,2,2-TriFluoroEthanol-d2 , 50% H2O 50% TFE-d2, 50% H2O null 4.5 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITYPLUS 500
NMR Refinement Method Details Software distance geometry,
simulated annealing and energy minimization XPLOR-NIH
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 50 Conformers Submitted Total Number 31 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution XPLOR-NIH 2.0.6 Brunger A.T. 2 processing VNMR 6.1 VARIAN 3 data analysis Sparky 3.110 Goddard T.D. and Kneller D.G. 4 data analysis PROCHECK-NMR 3.5.4 Laskowski, R.A and MacArthur M. 5 refinement XPLOR-NIH 2.0.6 Brunger A.T.