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Crystal structure of a putative contractile protein (bh3618) from bacillus halodurans at 1.67 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.3 277 0.2M KFormate, 20.9% PEG-3350, No Buffer, pH 7.3, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.1 273 0.2M NaF, 20.0% PEG-3350, No Buffer, pH 7.1, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 273K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.81 α = 90 b = 108.81 β = 90 c = 82.18 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2005-07-18 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-07-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 1.000001 SSRL BL11-1 2 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97913, 0.97929 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.67 47.14 93.4 0.065 12.93 6.6 64155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.67 1.73 81.4 81.4 0.753 1.72
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.67 47.12 60915 3213 99.97 0.169 0.167 0.178 0.191 0.2009 RANDOM 24.674
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.45 -0.73 -1.45 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.219 r_dihedral_angle_4_deg 18.796 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 6.468 r_scangle_it 5.545 r_scbond_it 3.918 r_mcangle_it 3.592 r_mcbond_it 2.502 r_angle_refined_deg 1.597 r_mcbond_other 1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.219 r_dihedral_angle_4_deg 18.796 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 6.468 r_scangle_it 5.545 r_scbond_it 3.918 r_mcangle_it 3.592 r_mcbond_it 2.502 r_angle_refined_deg 1.597 r_mcbond_other 1.19 r_angle_other_deg 0.808 r_symmetry_vdw_other 0.22 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.19 r_nbd_other 0.185 r_xyhbond_nbd_refined 0.183 r_nbtor_refined 0.179 r_symmetry_vdw_refined 0.165 r_chiral_restr 0.093 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2412 Nucleic Acid Atoms Solvent Atoms 401 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement XSCALE data processing PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling SHELXD phasing autoSHARP phasing