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Crystal Structure of High Mobility Like Protein, NHP2, putative from Cryptosporidium parvum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E7K PDB ENTRY 1E7K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 300 1.5 M Sodium Citrate and 0.1M Hepes pH 7.5, VAPOR DIFFUSION, temperature 300K
Crystal Properties Matthews coefficient Solvent content 1.7 27.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.703 α = 90 b = 90.703 β = 90 c = 31.275 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97972 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.895 17.9 90 0.068 0.068 10.7 6.7 6861 6861 25.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.895 1.93 61.3 0.397 0.397 2.01 4 228
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E7K 1.895 17.9 6358 6358 499 89.86 0.20335 0.19825 0.2007 0.27028 0.203 RANDOM 39.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.3 -1.15 -2.3 3.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.697 r_dihedral_angle_3_deg 22.113 r_dihedral_angle_4_deg 21.825 r_dihedral_angle_1_deg 7.308 r_scangle_it 6.247 r_scbond_it 3.653 r_angle_refined_deg 2.279 r_mcangle_it 2.216 r_mcbond_it 1.346 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.697 r_dihedral_angle_3_deg 22.113 r_dihedral_angle_4_deg 21.825 r_dihedral_angle_1_deg 7.308 r_scangle_it 6.247 r_scbond_it 3.653 r_angle_refined_deg 2.279 r_mcangle_it 2.216 r_mcbond_it 1.346 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.243 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.16 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 870 Nucleic Acid Atoms Solvent Atoms 30 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement JDirector data collection HKL-2000 data scaling MOLREP phasing O model building